Quickstart

1. Install dependencies

kmer-ord setup

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2. Run projection pipeline

kmer-ord project -i reads.fastq.gz -o output_dir

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3. Run clustering pipeline

kmer-ord cluster -i input.fastq -o output_dir

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4. Visualise results

kmer-ord visualise -d output_dir/kmerord.sqlite

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5. Launch interactive binning app

kmer-ord bin -d output_dir/kmerord.sqlite -o output_dir/bins

Then open:

http://localhost:8050

or

http://127.0.0.1:8050/

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6. Output

output_dir/
├── fasta/
├── summary/
├── kmer/
├── embeddings/
├── clustering/
├── bins/
├── plots/
└── kmer-ord.sqlite